Calendar

Introduction

Jan 10: Introduction & Logistics; OH Hosted by Zhang at 2:10-3:10 PM

Learning from sequence data

Jan 12

Dynamic programming & sequence alignment I: Xiuwei Zhang

Jan 17

No class (MLK day)

Jan 19

Sequence alignment II: Xiuwei Zhang

Jan 24

HMM & gene/motif finding: Xiuwei Zhang

OH Hosted by Zhang at 2:10-3:10 PM

Jan 26

HMM & Profile HMM: Xiuwei Zhang

Jan 30

HW1 due by 11:59 PM

Jan 31

Deep learning for DNA/protein sequence: Yunan Luo

OH Hosted by Luo at 2:10-3:10 PM

Learning from high-dim data

Feb 2

PCA, autoencoder & VAE: Yunan Luo

Feb 7

MDS, tSNE, UMAP: Xiuwei Zhang

OH Hosted by Zhang at 2:10-3:10 PM

Feb 9

Clustering I: Xiuwei Zhang

Feb 13

HW2 due by 11:59 PM

Feb 14

Clustering II: Xiuwei Zhang

OH Hosted by Zhang at 2:10-3:10 PM

Feb 16

Clustering III: Xiuwei Zhang

Feb 21

Student presentation 1-3

OH Hosted by Zhang at 2:10-3:10 PM

Feb 23

Student presentation 4-6

Learning from structure data

Feb 28

RNA structure prediction: Yunan Luo

OH Hosted by Luo at 2:10-3:10 PM

Mar 2

Deep learning for structures (protein structure prediction): Yunan Luo

Mar 6

HW3 due by 11:59 PM

Mar 7

Student presentation 7-9

OH Hosted by Luo at 2:10-3:10 PM

Learning from network data

Mar 9

Network basics & traditinal ML for graphs: Yunan Luo

Mar 14

Network embeddings: Yunan Luo

OH Hosted by Luo at 2:10-3:10 PM

Mar 16

Student presentation 10-12

Mar 20

HW4 due by 11:59 PM

Mar 21

No class (Spring break)

Mar 23

No class (Spring break)

Mar 28

Graphical Models: Yunan Luo

OH Hosted by Luo at 2:10-3:10 PM

Mar 30

Deep learning for networks (graph neural networks): Yunan Luo

Student presentations

Apr 4: Student presentation 13-15; OH Hosted by Luo at 2:10-3:10 PM
Apr 6: Student presentation 16-18
Apr 10: HW5 due by 11:59 PM
Apr 11: Student presentation 19-21
Apr 13: Student presentation 22-24
Apr 18: Student presentation 25-27
Apr 20: Student presentation 28-30
Apr 25: Student presentation 31-33